Scientific Inference Systems Laboratory
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References and Tutorials
Systems Biology
Collections and Textbooks
  • Alon, Uri (2006) An Introduction to Systems Biology: Design Principles of Biological Circuits. CRC.
  • Bower, James and Bolouri, Hamid, ed. (2001) Computational Modeling of genetic and biochemical networks. MIT Press.
  • Kitano, Hiroaki, ed. (2001) Foundations of systems biology. MIT Press.
  • Klipp, Edda, et. al. (2005) Systems biology in Practice: Concepts, Implementation, and Application. Wiley.
  • Kriete, Andres, ed. (2006) Computational Systems Biology. Academic.
  • Palsson, Bernhard (2006) Systems Biology: Properties of Reconstructed Networks. Cambridge University Press.
  • Szallasi, Zoltan, Jörg Stelling and Vipul Periwal (2006) System Modeling in Cellular Biology. MIT Press.
  • Wilkinson, Darren J. (2006) Stochastic Modeling for Systems Biology. CRC Press.
Papers
  • Kitano, Hiroaki (2002) Computational Systems Biology. Nature, 420:206-210.
Plants and Meristems
Texts
  • Taiz, Lincoln and Eduardo Zeiger (1998) Plant Physiogy, 2nd Edition. Sinauer.
Papers
  • Fletcher, Jennifer C and Elliot M. Meyerowitz (2000) Cell signaling within the shoot apical meristem, Current Opinion in Plant Biology, 3:23-30.
  • Meyerowitz, Elliot M (1997) Genetic control of cell division patterns in developing plants, Cell, 88:299-308.
Biochemical Kinetics
Texts
  • Cantor, Charles R and Schimmel, Paul R (1980) Biophysical Chemistry, Part III: The behavior of biological macromolecules . W.H. Freeman.
  • Cornish-Bowden, Athel (1995) Fundamentals of Enzyme Kinetics, Portland Press, London.
  • Segal, Lee (ed) (1991) Biological kinetics , Cambridge University Press.
  • Segel, Irwin (1993), Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme System , Wiley
Computational/Mathematical Biology
Texts
  • Britton, Nicholas F. (2003) Essential Mathematical Biology. Springer-Verlag.
  • Edelstein-Keshet, Leah (1988) Mathematical models in biology. Random House.
  • Ellner, Stephen P. and John Guckenhiemer (2006) Dynamic Models in Biology. Princeton Unverisity Press.
  • Fall, Christopher W, Marland, Eric S, Wagner, John M, and Tyson, John D (2002) Computational cell biology. Springer-Verlag.
  • Keener, James and Sneyd, James (1998) Mathematical physiology. Springer-Verlag.
  • Murray, James D. (1989) Mathematial biology , Springer-Verlag.
Papers
  • Mjolsness, Eric, David H Sharp and John Reinitz (1991) A connectionist model of development, Journal of Theoretical Biology, 152:429-453.
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