Exact acceleration of Gillespie's Stochastic Simulation Algorithm, with acceleration using
David Orendorff and Eric Mjolsness at UC Irvine (2012).
Welcome to the HiER-leap download page.
HiER-leap utilizes multicore CPUs to accelerate the sampling of single trajectories
of the Stochastic Simulation Algorithm (SSA).
Additionally, the HiER-leap algorithm utilizes rejection sampling to exactly sample
SSA using a "reaction leaping" method.
The code is written in C++. It requires the libSBML library before being compiled.
It was developed using Mac OS X (v10.6) although other operating systems and environments are expected to work.