Simulated annealing is a numerical optimization technique. The
Lam-Delosme annealing schedule provides a particularly efficient
method of performing this process. More information about
Lam-Delosme is
available
here.
Source code implementing parallelized Lam-Delosme simulated
annealing
within
Mathematica
is available
here.
An example which optimizes the parameters for a simple
xCellerator
model is
here.
References:
King-Wai Chu, Yuefan Deng, and John Reinitz, "Parallel Simulated
Annealing by Mixing of States," Journal of Computational
Physics, 148, 1999. (
pdf)
Johannes Jaeger et. al., "Dynamic control of positional
information in the early Drosophila embryo," Nature, 430,
2004. (
pdf)
Jimmy Lam, "An Efficient Simulated Annealing Schedule,"
Technical Report 8818, Ph.D. Dissertation, Yale Electrical
Engineering Department, New Haven, CT, September
1988. (
pdf)
Jimmy Lam and Jean-Marc Delosme, "An Efficient Simulated
Annealing Schedule: Derivation," Technical Report 8816, Yale
Electrical Engineering Department, New Haven, CT, September
1988. (
pdf)
Jimmy Lam and Jean-Marc Delosme, "An Efficient Simulated
Annealing Schedule: Implementation and Evaluation," Technical
Report 8817, Yale Electrical Engineering Department, New
Haven, CT, September 1988. (
pdf)
John Reinitz and David H. Sharp, "Mechanism of
eve
stripe formation," Mechanisms of Development, 49, 1995. (
pubmed)